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Other Dark / Overlay Networks

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Anonymity

Tor (The onion router) is an anonymity network that also features a darknet - its "hidden services". It's the most popular instance of a darknet.

P2P / F2F / Warez

I2P (Invisible Internet Project) is another overlay network that features a darknet whose sites are called "Eepsites".
Freenet is a popular darknet (friend-to-friend) by default; since version 0.7 it can run as a "opennet" (connecting to untrusted users).
yggdrasil is a new experimental compact routing scheme. It is designed to be a future-proof and decentralised alternative to the structured routing protocols commonly used today on the Internet, as well as an enabling technology for future large-scale mesh networks.
RetroShare can be run as a darknet (friend-to-friend) by default to perform anonymous file transfers if DHT and Discovery features are disabled.
GNUnet is a darknet if the "F2F (network) topology" option is enabled.
Syndie is software used to publish distributed forums over the anonymous networks of I2P, Tor and Freenet.
OneSwarm can be run as a darknet for friend-to-friend file-sharing.
Tribler can be run as a darknet for file-sharing.

BGP Routed IP

DN42
ChaosVPN
Anonet
router.city

Wireless

Freifunk

Unknown

Netsukuku
Agora

Babel

CRXN

AnoNet

A wiki page dedicated to the AnoNet Network: http://wiki.qontrol.nl/Anonet

TINC Clouds

This information is a caryover from the original dn42 wiki. most is unsubstantiated and probably invalid now. Included here for historical reasons. Keys and other parameters can be found in the registry under tinc-key and tinc-keyset

first tinc cloud 
================

ipv4: 172.22.255.176/28
ipv6: fd04:de02:7af9::/64 

IP              IPv6                    User         Host         ASN
--------------  ----------------------  ---------    -----------  -----
172.22.255.177                          downhill     geekhabitat  64655
172.22.255.178  fd04:de02:7af9::178/64  Martin89     martin89     64713
172.22.255.179  fd04:de02:7af9::179/64  welterde     hex          64738
172.22.255.180  fd04:de02:7af9::180/64  Vutral       vger         64787
172.22.255.181  fd04:de02:7af9::181/64         --- free ---
172.22.255.182  fd04:de02:7af9::182/64  mnl          aphrodite    64758
172.22.255.183                          UFO          ufoathome    64766
172.22.255.184  fd04:de02:7af9::184/64  ariel        shack        64714
172.22.255.185                          lowkey       cerberus?    65023
172.22.255.186  fd04:de02:7af9::186/64  schrodinger  crux         64664
172.22.255.187  fd04:de02:7af9::187/64  deelkar      deelkar      64827
172.22.255.188                          nospoonuser  nospoonuser  64756
172.22.255.189  fd04:de02:7af9::189/64         --- free ---
172.22.255.190  fd04:de02:7af9::190/64  liameph      meph?        64790
172.22.255.194  fd04:de02:7af9::194/64  merlin       noc          64831
172.22.255.195  fd04:de02:7af9::195/64  stephanj     stephanj     64674
--------------  ----------------------  ---------    -----------  -----

IPv6                                     User      Host      ASN
---------------------------------------  --------  --------  -----
fd04:de02:7af9:0000:dead:0000:fca0:1/64  dodger78  dodger78  64672
---------------------------------------  --------  --------  -----

second tinc cloud 
=================
(opened because the ipv4 range above is full)

ipv4: 172.22.255.160/28
ipv6: fd04:de02:7af9::/64

IP              IPv6                 User         Host         ASN
--------------  -------------------  ---------    -----------  -----
172.22.255.161  fd04:de02:7af9::161  uves         spline       64733
172.22.255.162  fd04:de02:7af9::162  petrus       beta         64751
--------------  -------------------  ---------    -----------  -----